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It was more disappointment for India as the 28-year-old Jinson, who broke his own national record just last month with a time of 3:35.24, failed to preserve enough energy for the home stretch.
Long jumper Anju Bobby George's bronze in Paris in 2003 still remained India's only medal at the showpiece event.
Struggling due to a lack of interest from locals, the 10-day showcase delivered on the final weekend as criticism over an empty stadium and stifling heat of around 38 degrees Celsius was replaced by an atmosphere at last worthy of a world event.
Defending champion Justin Gatlin took silver in 9.89sec at the age of 37 while Canada's Andre De Grasse claimed bronze in 9.90sec.
Hima Das could not qualify for her pet event 400m but she has been named to run in the women's 4x400m relay and the mixed 4x400m relay races.
The 20-year-old could only produce a best jump of 7.62m from his three attempts.
Fraser-Pryce, who returned to the track in earnest only last year after giving birth to a son, stormed across the line in a season-best time of 10.71 seconds followed by Britain's Dina Asher-Smith in 10.83.
The Indian quartet of Muhammed Anas, V K Vismaya, Jisna Mathew and Tom Nirmal Noah finished seventh.
It was just a tad slower than the 3:15.71 clocked by the Indian team while winning gold in the Asian Games last year.
The Sports Ministry came to Dutee's aid in her bid to compete in a few races to qualify for the Doha World Championships.
Results 31-40 of 43
