Steve Smith, who had a good hit on Wednesday evening, has also recovered from the wrist niggle.
Cummins, who fractured his wrist during the fifth Ashes Test at the Oval (July 27-31), has been advised rest for six weeks.
Australia finished day two at 116/4 with a lead of 142.
Travis Head remains unbeaten on 146 while Steven Smith gives him company at 95.
Cummins said picking Boland ahead of Neser as the third pacer, behind Cummins and Mitchell Starc, was 'no surprise' considering the variety the Victorian offered.
Cummins agrees that Trent Boult's decision to deny a New Zealand central contract for lucrative T20 league around the world has been in the offing since IPL changed the complexion of the game a decade ago.
Regular captain Pat Cummins, who lost his mother recently, will not return for the three-match series.
The Australian players will wear black armbands as a mark of respect for Cummins's deceased mother on day two of the ongoing fourth and final Test.
Regular captain Pat Cummins will be staying with his family in Sydney.
Coach Andrew McDonald said Cummins remained in touch with rest of the squad in India.