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The growing protests follow mass arrests of demonstrators at some East Coast universities in recent days and show a deepening dissatisfaction in the United States, historically Israel's most important ally, with the course of the war with Hamas.
More than 200 bodies of people killed and buried at Nasser hospital were uncovered, say reports.
Palestinian health authorities say more than 34,000 people have been confirmed killed in the seven-month war, with thousands more bodies unrecovered.
The US president has also previously called Israel's bombing in Gaza 'indiscriminate' and its military actions 'over the top.'
Chanting "elections now", protesters called for Netanyahu's resignation.
The Israeli military on Friday said its inquiry into the strikes on the aid convoy found serious errors and breaches of procedure.
Besides India, 12 other nations, including Japan and France also abstained from voting on the resolution
The US president, a lifelong supporter of Israel, has resisted pressure to withhold aid or halt the shipment of weapons to the country.
Israel had said it was interested only in a temporary truce to free hostages. Hamas has said it will let them go only as part of a deal to permanently end the war.
The Israeli military said it had killed and detained hundreds of gunmen in clashes in the area of the hospital.