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The former England captain reckons lack of Plan B and the uncertain nature of the shortest format of the game could hurt Team India in the knockout phase.
Kohli said teams would underestimate the 2009 champions at their own peril.
Pakistan have never won against India on the biggest stage, losing all of their 12 matches at the T20 and 50-over World Cups.
Indian captain Virat Kohli and his Pakistani counterpart Babar Azam have called it just another game, but that is clearly not the case.
Stoinis and Wade held their nerve superbly during an unbroken sixth-wicket stand to take Australia past their 119-run target with two balls remaining.
Ganguly attributed Kohli's call to the gruelling schedule that takes a toll on both mind and body.
BCCI secretary Jay Shah said he was delighted the series will have a "rightful conclusion".
India have lorded over Pakistan in World Cups, with a combined 12-0 record across the ODI and T20 showpiece events.
Already through to the Super 12s, Sri Lanka bundled out Netherlands for just 44 runs.
Earlier, Namibian bowlers made a strong comeback after Ireland made a brisk start to restrict them to a modest 125 for 8.
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