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Earlier, a medical board constituted following the court's order had decided to accept the body for medical studies.
The amount includes Rs 291.2 crore released by the Union government.
The deceased's daughter had moved the court against her siblings' decision to hand over the body to the medical college.
Gopi apologised earlier, asserting that he intended to treat the journalist affectionately.
The complaint was filed by CPM's V V Ramesan, the party's 2021 assembly candidate in Manjeshwar.
The actor is accused of sexual harassment and of outraging the modesty of women in two separate cases.
Name of survivor to be masked in FIR, copy of FIS not to be made public: HC
Actor Dileep is a co-accused in the case
The SIT submitted an action-taken report to the Government on September 28, which was handed over to the High Court in a sealed cover.
Case quashed after Haritha leaders agreed not to press with the prosecution after the intervention by IUML leaders.