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The student alleged that she was sexually harassed on the night of March 31 on the campus by four people, including two former students.
If convicted, he faces a maximum punishment of five years and/or a fine.
The teacher in the Department of English and Comparative Literature is accused of sexually harassing female students.
The accused, identified as Sreekumar S alias Kuttan, a resident of Muttanattuchira House, sexually harassed a young woman while having food at the wedding reception.
During the investigation, police took the DNA sample of the survivor and her newborn but did not take the sample of the accused.
Efthikar Ahamed has denied the charges and said he was being targeted because of his politics and the doctor's personal grudge against him.
The women marched from Periya town to the campus -- a distance of 1km -- but the police stopped them at the entrance.
Efthikar Ahamed B had said the lawyer told him he was lucky as 'the places where the student said you touched do not have any sexual organs'.
In the order, Vice Chancellor in-charge Prof Baiju K C said a disciplinary proceeding against Dr Efthikar Ahamed is being contemplated based on the allegations raised by the students.
During the trial, he told the court that he was not the father of the girl and sought the court's permission to conduct a DNA paternity test.