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Seamer Renuka Singh Thakur and spinner Radha Yadav took three wickets each as India restricted Bangladesh to 80/8 before opener Shafali Verma and Smriti Mandhana chased it down in just 11 overs.
Banerjee referred to the United Nations resolution on refugees as justification for her stand.
Atleast 114 people have been killed in the student-led protests.
A senior home department official said that 363 people reached Meghalaya through the Dawki Integrated Check Post.
Telecommunications were also disrupted and television news channels went off the air.
Thursday's violence in 47 of Bangladesh's 64 districts killed 27 and injured 1,500.
Anti-quota protests have killed at least 10 people this week.
Rahman's son Tahsin Tajwar Zia was also playing in the same tournament and was inside the hall when the incident happened.
Veteran all-rounder and former captain Shakib Al Hasan said the pacer's late arrival made it 'difficult' for him to be selected.
Shanto blamed his batting unit for the disappointing run in the Super Eight stage of the T20 World Cup.