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Based on the government order, Anitha (30) was relieved from her duty on Thursday by the government medical college principal Dr N Ashokan.
The incident took place between March 2018 and September 2019.
The accused, Christel, who is a history-sheeter, has been charged with kidnapping, rape and theft.
Khan made a vile remark about Trisha in connection with filming for the Vijay-starrer Leo.
The parents of the 5-year-old girl who was raped and murdered in Aluva was duped by the husband of a Mahila Congress leader.
The girl, who was 14 at the time of the incident, had said she was repeatedly raped by her father.
The prosecution had demanded that the case be considered among the rarest of the rare and sentence the accused, Ashfaq Alam (28), to capital punishment.
The chief minister said that the child fell victim to the most heinous crime and therefore, the entire criminal justice system worked efficiently to catch the culprit.
The ADGP also commended the local residents, media and authorities for helping in the case since the beginning.