If the allegations against the petitioner are false, MLA Ganesh Kumar's honest intentions will be proved, the court added.
He has been asked to appear before the court on October 18.
CPM is unhappy over the developments, as the party does not want to create a fresh crisis over the Cabinet reshuffle soon after the LDF’s debacle in the Puthuppally Assembly byelection.
Natesan also criticized Ganesh Kumar's appointment as a minister, calling it a degradation of democracy.
Oommen Chandy made this statement in the First Class Judicial Magistrate Court, Kottarakkara, on August 3, 2018, in a petition filed by Congress leader Sudheer Jacob
He said Kerala Congress (M) leader Jose K Mani's name was also not in the original complaint and was added later.
She also alleged that Ganesh Kumar’s father, R Balakrishna Pillai, and some Congress leaders had pressured her to alter her statement.
The report giving clean-chit to Chandy was accepted by the Thiruvananthapuram Chief Judicial Magistrate a week ago.
Earlier, it was reported that the CPM-led government divested the one-legislator party of the chairmanship of the Kerala State Welfare Corporation for Forward Communities.
Terming Vinayakan as one lacking dignity and decency, Ganesh Kumar slammed him for committing 'a very unfortunate and shameful act'.